mGPLVM
Getting Started
Install
Examples
(Bayesian) GPFA
Supervised learning and decoding with manifold GPLVMs
Applying mGPLVM to synthetic neural data generated from circular latents
Fitting mGPLVM to data from the fly central complex
API
mgplvm package
mGPLVM
»
Index
Index
A
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B
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C
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D
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E
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F
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G
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I
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K
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L
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M
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N
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P
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Q
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R
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S
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T
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U
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V
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Z
A
add_tangent_vector() (mgplvm.syndata.gen_data.Product method)
arg_constraints (mgplvm.dists.NegativeBinomial attribute)
ARP (class in mgplvm.lpriors.common)
B
batch_capacitance_tril() (in module mgplvm.models.bfa)
BatchDataLoader (class in mgplvm.optimisers.data)
Bfa (class in mgplvm.models.bfa)
Brownian (class in mgplvm.lpriors.common)
Bvfa (class in mgplvm.models.bfa)
C
c (mgplvm.rdist.GP_circ.GP_circ property)
calc_LL() (mgplvm.models.gplvm.Gplvm method)
concentration_parameters() (mgplvm.rdist.common.Rdist method)
(mgplvm.rdist.GPbase.GPbase method)
(mgplvm.rdist.relie.ReLieBase method)
conj() (in module mgplvm.manifolds.quaternion)
D
DataLoader (class in mgplvm.optimisers.data)
diagK() (mgplvm.kernels.kernel.Kernel static method)
(mgplvm.kernels.linear.Linear method)
(mgplvm.kernels.stationary.Stationary method)
dim_scale (mgplvm.models.bfa.Bfa property)
(mgplvm.models.bfa.Bvfa property)
dist() (mgplvm.likelihoods.Gaussian method)
(mgplvm.likelihoods.Likelihood static method)
(mgplvm.likelihoods.NegativeBinomial method)
(mgplvm.likelihoods.Poisson method)
(mgplvm.likelihoods.ZIPoisson method)
dist_mean() (mgplvm.likelihoods.Gaussian method)
(mgplvm.likelihoods.Likelihood static method)
(mgplvm.likelihoods.NegativeBinomial method)
(mgplvm.likelihoods.Poisson method)
(mgplvm.likelihoods.ZIPoisson method)
distance() (mgplvm.manifolds.base.Manifold static method)
(mgplvm.manifolds.euclid.Euclid static method)
(mgplvm.manifolds.s3.S3 static method)
(mgplvm.manifolds.so3.So3 static method)
(mgplvm.manifolds.torus.Torus static method)
(mgplvm.syndata.gen_data.Euclid method)
(mgplvm.syndata.gen_data.Manif method)
(mgplvm.syndata.gen_data.Product method)
(mgplvm.syndata.gen_data.So3 method)
(mgplvm.syndata.gen_data.Sphere method)
(mgplvm.syndata.gen_data.Torus method)
distance_scaled() (mgplvm.syndata.gen_data.Product method)
draw_GP() (in module mgplvm.syndata.gen_data)
DS (class in mgplvm.lpriors.euclidean)
E
elbo() (mgplvm.models.bfa.Bfa method)
(mgplvm.models.bfa.Bvfa method)
(mgplvm.models.bfa.Fa method)
(mgplvm.models.bfa.vFa method)
(mgplvm.models.gp_base.GpBase method)
(mgplvm.models.gplvm.Gplvm method)
(mgplvm.models.svgp.SvgpBase method)
ell (mgplvm.kernels.stationary.Stationary property)
(mgplvm.rdist.GPbase.GPbase property)
Euclid (class in mgplvm.manifolds.euclid)
(class in mgplvm.syndata.gen_data)
Exp (class in mgplvm.kernels.stationary)
exp_link() (in module mgplvm.likelihoods)
expand() (mgplvm.dists.NegativeBinomial method)
expmap() (mgplvm.manifolds.base.Manifold static method)
(mgplvm.manifolds.euclid.Euclid static method)
(mgplvm.manifolds.s3.S3 static method)
(mgplvm.manifolds.so3.So3 static method)
(mgplvm.manifolds.torus.Torus static method)
expmap2() (mgplvm.manifolds.s3.S3 static method)
(mgplvm.manifolds.so3.So3 static method)
F
Fa (class in mgplvm.models.bfa)
FA_init() (in module mgplvm.likelihoods)
fio_id() (in module mgplvm.lpriors.euclidean)
fio_ReLU() (in module mgplvm.lpriors.euclidean)
fio_tanh() (in module mgplvm.lpriors.euclidean)
fit() (in module mgplvm.optimisers.svgp)
forward() (mgplvm.kernels.kernel.Kernel method)
(mgplvm.lpriors.common.ARP method)
(mgplvm.lpriors.common.Brownian method)
(mgplvm.lpriors.common.Gaussian method)
(mgplvm.lpriors.common.Null method)
(mgplvm.lpriors.common.Uniform method)
(mgplvm.lpriors.euclidean.DS method)
(mgplvm.lpriors.euclidean.GP method)
(mgplvm.lpriors.torus.IARP method)
(mgplvm.lpriors.torus.LARP method)
(mgplvm.lpriors.torus.VonMises method)
(mgplvm.models.gplvm.Gplvm method)
full_cov() (mgplvm.rdist.GPbase.GPbase method)
G
g0_parameters() (mgplvm.models.bfa.Bfa method)
(mgplvm.models.bfa.Bvfa method)
(mgplvm.models.bfa.Fa method)
(mgplvm.models.bfa.vFa method)
(mgplvm.models.svgp.Svgp method)
g1_parameters() (mgplvm.models.bfa.Bfa method)
(mgplvm.models.bfa.Bvfa method)
(mgplvm.models.bfa.Fa method)
(mgplvm.models.bfa.vFa method)
(mgplvm.models.svgp.Svgp method)
Gaussian (class in mgplvm.likelihoods)
(class in mgplvm.lpriors.common)
Gen (class in mgplvm.syndata.gen_data)
gen() (mgplvm.syndata.gen_data.Euclid method)
(mgplvm.syndata.gen_data.Manif method)
(mgplvm.syndata.gen_data.Product method)
(mgplvm.syndata.gen_data.So3 method)
(mgplvm.syndata.gen_data.Sphere method)
(mgplvm.syndata.gen_data.Torus method)
gen_data() (mgplvm.syndata.gen_data.Gen method)
gen_gconds() (mgplvm.syndata.gen_data.Gen method)
gen_ginit() (mgplvm.syndata.gen_data.Euclid method)
(mgplvm.syndata.gen_data.Product method)
(mgplvm.syndata.gen_data.So3 method)
(mgplvm.syndata.gen_data.Sphere method)
(mgplvm.syndata.gen_data.Torus method)
gen_gprefs() (mgplvm.syndata.gen_data.Gen method)
get_data() (mgplvm.syndata.gen_data.Gen method)
get_device() (in module mgplvm.utils)
get_next() (mgplvm.optimisers.data.BatchDataLoader method)
get_params() (mgplvm.syndata.gen_data.Gen method)
gmu_parameters() (mgplvm.rdist.common.Rdist method)
(mgplvm.rdist.GP_circ.GP_circ method)
(mgplvm.rdist.GPbase.GPbase method)
(mgplvm.rdist.relie.ReLieBase method)
gmul() (mgplvm.manifolds.base.Manifold method)
(mgplvm.manifolds.euclid.Euclid static method)
(mgplvm.manifolds.s3.S3 static method)
(mgplvm.manifolds.so3.So3 static method)
(mgplvm.manifolds.torus.Torus static method)
GP (class in mgplvm.lpriors.euclidean)
GP_circ (class in mgplvm.rdist.GP_circ)
GP_diag (class in mgplvm.rdist.GP_diag)
GpBase (class in mgplvm.models.gp_base)
GPbase (class in mgplvm.rdist.GPbase)
Gplvm (class in mgplvm.models.gplvm)
I
I_v() (mgplvm.rdist.GP_circ.GP_circ method)
(mgplvm.rdist.GP_diag.GP_diag method)
(mgplvm.rdist.GPbase.GPbase method)
IARP (class in mgplvm.lpriors.torus)
id_link() (in module mgplvm.likelihoods)
inducing_points() (mgplvm.manifolds.base.Manifold method)
(mgplvm.manifolds.euclid.Euclid method)
(mgplvm.manifolds.s3.S3 method)
(mgplvm.manifolds.so3.So3 method)
(mgplvm.manifolds.torus.Torus method)
InducingPoints (class in mgplvm.inducing_variables)
initialize() (mgplvm.manifolds.base.Manifold static method)
(mgplvm.manifolds.euclid.Euclid static method)
(mgplvm.manifolds.s3.S3 static method)
(mgplvm.manifolds.so3.So3 method)
(mgplvm.manifolds.torus.Torus static method)
input_scale (mgplvm.kernels.linear.Linear property)
inv_softplus() (in module mgplvm.utils)
inverse() (mgplvm.manifolds.base.Manifold method)
(mgplvm.manifolds.euclid.Euclid static method)
(mgplvm.manifolds.s3.S3 static method)
(mgplvm.manifolds.so3.So3 static method)
(mgplvm.manifolds.torus.Torus static method)
K
K() (mgplvm.kernels.kernel.Kernel static method)
(mgplvm.kernels.linear.Linear method)
(mgplvm.kernels.stationary.Exp method)
(mgplvm.kernels.stationary.Matern method)
(mgplvm.kernels.stationary.QuadExp method)
K_half() (mgplvm.rdist.GPbase.GPbase method)
Kernel (class in mgplvm.kernels.kernel)
kl() (mgplvm.rdist.GP_circ.GP_circ method)
(mgplvm.rdist.GP_diag.GP_diag method)
(mgplvm.rdist.GPbase.GPbase method)
L
LARP (class in mgplvm.lpriors.torus)
lat_gamma() (mgplvm.rdist.relie.ReLieBase method)
lat_gmu() (mgplvm.rdist.relie.ReLieBase method)
lat_mu (mgplvm.rdist.GPbase.GPbase property)
lat_prms() (mgplvm.rdist.relie.ReLieBase method)
Lgplvm (class in mgplvm.models.lgplvm)
Likelihood (class in mgplvm.likelihoods)
Linear (class in mgplvm.kernels.linear)
linear_cg() (in module mgplvm.fast_utils.linear_cg)
load_model() (in module mgplvm.crossval.construct_model)
log_prob (mgplvm.likelihoods.Likelihood property)
log_prob() (mgplvm.dists.NegativeBinomial method)
(mgplvm.likelihoods.Gaussian method)
(mgplvm.likelihoods.NegativeBinomial method)
(mgplvm.likelihoods.Poisson method)
(mgplvm.likelihoods.ZIPoisson method)
(mgplvm.models.bfa.Bfa method)
(mgplvm.models.bfa.Fa method)
log_q() (mgplvm.manifolds.base.Manifold static method)
(mgplvm.manifolds.euclid.Euclid static method)
(mgplvm.manifolds.s3.S3 static method)
(mgplvm.manifolds.so3.So3 static method)
(mgplvm.manifolds.torus.Torus static method)
log_uniform (mgplvm.manifolds.s3.S3 attribute)
(mgplvm.manifolds.so3.So3 attribute)
(mgplvm.manifolds.torus.Torus property)
logmap() (mgplvm.manifolds.base.Manifold static method)
(mgplvm.manifolds.euclid.Euclid static method)
(mgplvm.manifolds.s3.S3 static method)
(mgplvm.manifolds.so3.So3 static method)
(mgplvm.manifolds.torus.Torus static method)
LossMarginStop (class in mgplvm.optimisers.stopping_criterions)
Lprior (class in mgplvm.lpriors.common)
lprior() (mgplvm.manifolds.base.Manifold method)
(mgplvm.manifolds.euclid.Euclid method)
(mgplvm.manifolds.s3.S3 method)
(mgplvm.manifolds.so3.So3 method)
(mgplvm.manifolds.torus.Torus method)
LpriorEuclid (class in mgplvm.lpriors.euclidean)
LpriorTorus (class in mgplvm.lpriors.torus)
Lvgplvm (class in mgplvm.models.lgplvm)
M
Manif (class in mgplvm.syndata.gen_data)
Manifold (class in mgplvm.manifolds.base)
Matern (class in mgplvm.kernels.stationary)
mean (mgplvm.dists.NegativeBinomial property)
mgplvm
module
mgplvm.base
module
mgplvm.crossval
module
mgplvm.crossval.construct_model
module
mgplvm.crossval.crossval
module
mgplvm.crossval.crossval_bgpfa
module
mgplvm.crossval.train_model
module
mgplvm.dists
module
mgplvm.fast_utils
module
mgplvm.fast_utils.broadcasting
module
mgplvm.fast_utils.linear_cg
module
mgplvm.fast_utils.toeplitz
module
mgplvm.inducing_variables
module
mgplvm.kernels
module
mgplvm.kernels.kernel
module
mgplvm.kernels.linear
module
mgplvm.kernels.stationary
module
mgplvm.likelihoods
module
mgplvm.lpriors
module
mgplvm.lpriors.common
module
mgplvm.lpriors.euclidean
module
mgplvm.lpriors.torus
module
mgplvm.manifolds
module
mgplvm.manifolds.base
module
mgplvm.manifolds.euclid
module
mgplvm.manifolds.quaternion
module
mgplvm.manifolds.s3
module
mgplvm.manifolds.so3
module
mgplvm.manifolds.torus
module
mgplvm.models
module
mgplvm.models.bfa
module
mgplvm.models.gp_base
module
mgplvm.models.gplvm
module
mgplvm.models.lgplvm
module
mgplvm.models.svgp
module
mgplvm.models.svgplvm
module
mgplvm.optimisers
module
mgplvm.optimisers.data
module
mgplvm.optimisers.stopping_criterions
module
mgplvm.optimisers.svgp
module
mgplvm.rdist
module
mgplvm.rdist.common
module
mgplvm.rdist.GP_circ
module
mgplvm.rdist.GP_diag
module
mgplvm.rdist.GPbase
module
mgplvm.rdist.relie
module
mgplvm.syndata
module
mgplvm.syndata.gen_data
module
mgplvm.utils
module
model_params() (in module mgplvm.crossval.construct_model)
module
mgplvm
mgplvm.base
mgplvm.crossval
mgplvm.crossval.construct_model
mgplvm.crossval.crossval
mgplvm.crossval.crossval_bgpfa
mgplvm.crossval.train_model
mgplvm.dists
mgplvm.fast_utils
mgplvm.fast_utils.broadcasting
mgplvm.fast_utils.linear_cg
mgplvm.fast_utils.toeplitz
mgplvm.inducing_variables
mgplvm.kernels
mgplvm.kernels.kernel
mgplvm.kernels.linear
mgplvm.kernels.stationary
mgplvm.likelihoods
mgplvm.lpriors
mgplvm.lpriors.common
mgplvm.lpriors.euclidean
mgplvm.lpriors.torus
mgplvm.manifolds
mgplvm.manifolds.base
mgplvm.manifolds.euclid
mgplvm.manifolds.quaternion
mgplvm.manifolds.s3
mgplvm.manifolds.so3
mgplvm.manifolds.torus
mgplvm.models
mgplvm.models.bfa
mgplvm.models.gp_base
mgplvm.models.gplvm
mgplvm.models.lgplvm
mgplvm.models.svgp
mgplvm.models.svgplvm
mgplvm.optimisers
mgplvm.optimisers.data
mgplvm.optimisers.stopping_criterions
mgplvm.optimisers.svgp
mgplvm.rdist
mgplvm.rdist.common
mgplvm.rdist.GP_circ
mgplvm.rdist.GP_diag
mgplvm.rdist.GPbase
mgplvm.rdist.relie
mgplvm.syndata
mgplvm.syndata.gen_data
mgplvm.utils
Module (class in mgplvm.base)
msg (mgplvm.kernels.linear.Linear property)
(mgplvm.kernels.stationary.Matern property)
(mgplvm.kernels.stationary.Stationary property)
(mgplvm.likelihoods.Gaussian property)
(mgplvm.likelihoods.Likelihood property)
(mgplvm.likelihoods.NegativeBinomial property)
(mgplvm.likelihoods.Poisson property)
(mgplvm.likelihoods.ZIPoisson property)
(mgplvm.lpriors.common.ARP property)
(mgplvm.lpriors.common.Brownian property)
(mgplvm.lpriors.common.Gaussian property)
(mgplvm.lpriors.common.Lprior property)
(mgplvm.lpriors.common.Null property)
(mgplvm.lpriors.common.Uniform property)
(mgplvm.lpriors.euclidean.DS property)
(mgplvm.lpriors.euclidean.GP property)
(mgplvm.lpriors.torus.IARP property)
(mgplvm.lpriors.torus.LARP property)
(mgplvm.lpriors.torus.VonMises property)
(mgplvm.models.bfa.Bfa property)
(mgplvm.models.bfa.Bvfa property)
(mgplvm.models.bfa.Fa property)
(mgplvm.models.bfa.vFa property)
(mgplvm.models.svgp.Svgp property)
msg() (mgplvm.rdist.GPbase.GPbase method)
(mgplvm.rdist.relie.ReLieBase method)
mvn() (mgplvm.rdist.relie.ReLieBase method)
N
name (mgplvm.kernels.linear.Linear attribute)
(mgplvm.likelihoods.Gaussian attribute)
(mgplvm.likelihoods.NegativeBinomial attribute)
(mgplvm.likelihoods.Poisson attribute)
(mgplvm.likelihoods.ZIPoisson attribute)
(mgplvm.lpriors.common.ARP attribute)
(mgplvm.lpriors.common.Brownian attribute)
(mgplvm.lpriors.common.Gaussian attribute)
(mgplvm.lpriors.common.Null attribute)
(mgplvm.lpriors.common.Uniform attribute)
(mgplvm.lpriors.euclidean.DS attribute)
(mgplvm.lpriors.euclidean.GP attribute)
(mgplvm.lpriors.torus.IARP attribute)
(mgplvm.lpriors.torus.LARP attribute)
(mgplvm.lpriors.torus.VonMises attribute)
(mgplvm.manifolds.base.Manifold property)
(mgplvm.manifolds.euclid.Euclid property)
(mgplvm.manifolds.s3.S3 property)
(mgplvm.manifolds.so3.So3 property)
(mgplvm.manifolds.torus.Torus property)
(mgplvm.models.bfa.Bfa attribute)
(mgplvm.models.bfa.Bvfa attribute)
(mgplvm.models.bfa.Fa attribute)
(mgplvm.models.bfa.vFa attribute)
(mgplvm.models.gplvm.Gplvm attribute)
(mgplvm.models.lgplvm.Lgplvm attribute)
(mgplvm.models.lgplvm.Lvgplvm attribute)
(mgplvm.models.svgp.Svgp attribute)
(mgplvm.models.svgplvm.SvgpLvm attribute)
(mgplvm.rdist.GP_circ.GP_circ attribute)
(mgplvm.rdist.GP_diag.GP_diag attribute)
(mgplvm.rdist.GPbase.GPbase attribute)
(mgplvm.rdist.relie.ReLie attribute)
(mgplvm.rdist.relie.ReLieBase attribute)
(mgplvm.syndata.gen_data.Euclid property)
(mgplvm.syndata.gen_data.Product property)
(mgplvm.syndata.gen_data.So3 property)
(mgplvm.syndata.gen_data.Sphere property)
(mgplvm.syndata.gen_data.Torus property)
name() (mgplvm.syndata.gen_data.Manif method)
NegativeBinomial (class in mgplvm.dists)
(class in mgplvm.likelihoods)
neuron_scale (mgplvm.models.bfa.Bfa property)
(mgplvm.models.bfa.Bvfa property)
noisy_conds() (mgplvm.syndata.gen_data.Euclid method)
(mgplvm.syndata.gen_data.Gen method)
(mgplvm.syndata.gen_data.So3 method)
(mgplvm.syndata.gen_data.Sphere method)
(mgplvm.syndata.gen_data.Torus method)
norm() (mgplvm.syndata.gen_data.So3 method)
(mgplvm.syndata.gen_data.Sphere method)
(mgplvm.syndata.gen_data.Torus method)
not_in() (in module mgplvm.crossval.crossval)
nu (mgplvm.rdist.GPbase.GPbase property)
Null (class in mgplvm.lpriors.common)
P
param_shape (mgplvm.dists.NegativeBinomial property)
parameterise() (mgplvm.manifolds.base.Manifold static method)
(mgplvm.manifolds.euclid.Euclid static method)
(mgplvm.manifolds.s3.S3 static method)
(mgplvm.manifolds.so3.So3 static method)
(mgplvm.manifolds.torus.Torus static method)
parameterise_inducing() (mgplvm.manifolds.so3.So3 method)
Poisson (class in mgplvm.likelihoods)
predict() (mgplvm.models.bfa.Bfa method)
(mgplvm.models.bfa.Bvfa method)
(mgplvm.models.bfa.Fa method)
(mgplvm.models.bfa.vFa method)
(mgplvm.models.svgp.SvgpBase method)
print_progress() (in module mgplvm.optimisers.svgp)
prior_kl() (mgplvm.models.bfa.Bvfa method)
(mgplvm.models.svgp.SvgpBase method)
prms (mgplvm.base.Module property)
(mgplvm.inducing_variables.InducingPoints property)
(mgplvm.kernels.linear.Linear property)
(mgplvm.kernels.stationary.Stationary property)
(mgplvm.likelihoods.Gaussian property)
(mgplvm.likelihoods.NegativeBinomial property)
(mgplvm.likelihoods.Poisson property)
(mgplvm.likelihoods.ZIPoisson property)
(mgplvm.lpriors.common.ARP property)
(mgplvm.lpriors.common.Brownian property)
(mgplvm.lpriors.common.Gaussian property)
(mgplvm.lpriors.euclidean.DS property)
(mgplvm.lpriors.euclidean.GP property)
(mgplvm.lpriors.torus.IARP property)
(mgplvm.lpriors.torus.LARP property)
(mgplvm.lpriors.torus.VonMises property)
(mgplvm.models.bfa.Bfa property)
(mgplvm.models.bfa.Bvfa property)
(mgplvm.models.bfa.Fa property)
(mgplvm.models.bfa.vFa property)
(mgplvm.models.svgp.Svgp property)
(mgplvm.rdist.GP_circ.GP_circ property)
(mgplvm.rdist.GPbase.GPbase property)
(mgplvm.rdist.relie.ReLie property)
(mgplvm.rdist.relie.ReLieBase property)
prms() (mgplvm.lpriors.common.Null method)
(mgplvm.lpriors.common.Uniform method)
Product (class in mgplvm.syndata.gen_data)
product() (in module mgplvm.manifolds.quaternion)
Q
q_mu (mgplvm.models.bfa.Bvfa property)
q_sqrt (mgplvm.models.bfa.Bvfa property)
QuadExp (class in mgplvm.kernels.stationary)
R
Rdist (class in mgplvm.rdist.common)
ReLie (class in mgplvm.rdist.relie)
ReLieBase (class in mgplvm.rdist.relie)
reweight() (mgplvm.kernels.linear.Linear method)
S
S3 (class in mgplvm.manifolds.s3)
sample() (mgplvm.dists.NegativeBinomial method)
(mgplvm.likelihoods.Gaussian method)
(mgplvm.likelihoods.Likelihood static method)
(mgplvm.likelihoods.NegativeBinomial method)
(mgplvm.likelihoods.Poisson method)
(mgplvm.likelihoods.ZIPoisson method)
(mgplvm.models.bfa.Bvfa method)
(mgplvm.models.bfa.Fa method)
(mgplvm.models.bfa.vFa method)
(mgplvm.models.svgp.SvgpBase method)
(mgplvm.rdist.common.Rdist method)
(mgplvm.rdist.GPbase.GPbase method)
(mgplvm.rdist.relie.ReLieBase method)
scale (mgplvm.kernels.linear.Linear property)
(mgplvm.kernels.stationary.Stationary property)
(mgplvm.models.bfa.Bfa property)
(mgplvm.models.bfa.Bvfa property)
(mgplvm.rdist.GPbase.GPbase property)
scale_sqr (mgplvm.kernels.linear.Linear property)
(mgplvm.kernels.stationary.Stationary property)
set_param() (mgplvm.syndata.gen_data.Gen method)
sigma (mgplvm.likelihoods.Gaussian property)
(mgplvm.models.bfa.Bfa property)
(mgplvm.models.bfa.Fa property)
So3 (class in mgplvm.manifolds.so3)
(class in mgplvm.syndata.gen_data)
softplus() (in module mgplvm.utils)
sort_params() (in module mgplvm.optimisers.svgp)
Sphere (class in mgplvm.syndata.gen_data)
Stationary (class in mgplvm.kernels.stationary)
support (mgplvm.dists.NegativeBinomial attribute)
Svgp (class in mgplvm.models.svgp)
SvgpBase (class in mgplvm.models.svgp)
SvgpLvm (class in mgplvm.models.svgplvm)
sym_toeplitz() (in module mgplvm.fast_utils.toeplitz)
sym_toeplitz_derivative_quadratic_form() (in module mgplvm.fast_utils.toeplitz)
sym_toeplitz_getitem() (in module mgplvm.fast_utils.toeplitz)
sym_toeplitz_matmul() (in module mgplvm.fast_utils.toeplitz)
T
test_cv() (in module mgplvm.crossval.crossval)
toeplitz() (in module mgplvm.fast_utils.toeplitz)
toeplitz_getitem() (in module mgplvm.fast_utils.toeplitz)
toeplitz_matmul() (in module mgplvm.fast_utils.toeplitz)
Torus (class in mgplvm.manifolds.torus)
(class in mgplvm.syndata.gen_data)
total_count (mgplvm.likelihoods.NegativeBinomial property)
train_cv() (in module mgplvm.crossval.crossval)
train_cv_bgpfa() (in module mgplvm.crossval.crossval_bgpfa)
train_model() (in module mgplvm.crossval.train_model)
training (mgplvm.base.Module attribute)
(mgplvm.inducing_variables.InducingPoints attribute)
(mgplvm.kernels.kernel.Kernel attribute)
(mgplvm.kernels.linear.Linear attribute)
(mgplvm.kernels.stationary.Exp attribute)
(mgplvm.kernels.stationary.Matern attribute)
(mgplvm.kernels.stationary.QuadExp attribute)
(mgplvm.kernels.stationary.Stationary attribute)
(mgplvm.likelihoods.Gaussian attribute)
(mgplvm.likelihoods.Likelihood attribute)
(mgplvm.likelihoods.NegativeBinomial attribute)
(mgplvm.likelihoods.Poisson attribute)
(mgplvm.likelihoods.ZIPoisson attribute)
(mgplvm.lpriors.common.ARP attribute)
(mgplvm.lpriors.common.Brownian attribute)
(mgplvm.lpriors.common.Gaussian attribute)
(mgplvm.lpriors.common.Lprior attribute)
(mgplvm.lpriors.common.Null attribute)
(mgplvm.lpriors.common.Uniform attribute)
(mgplvm.lpriors.euclidean.DS attribute)
(mgplvm.lpriors.euclidean.GP attribute)
(mgplvm.lpriors.euclidean.LpriorEuclid attribute)
(mgplvm.lpriors.torus.IARP attribute)
(mgplvm.lpriors.torus.LARP attribute)
(mgplvm.lpriors.torus.LpriorTorus attribute)
(mgplvm.lpriors.torus.VonMises attribute)
(mgplvm.models.bfa.Bfa attribute)
(mgplvm.models.bfa.Bvfa attribute)
(mgplvm.models.bfa.Fa attribute)
(mgplvm.models.bfa.vFa attribute)
(mgplvm.models.gp_base.GpBase attribute)
(mgplvm.models.gplvm.Gplvm attribute)
(mgplvm.models.lgplvm.Lgplvm attribute)
(mgplvm.models.lgplvm.Lvgplvm attribute)
(mgplvm.models.svgp.Svgp attribute)
(mgplvm.models.svgp.SvgpBase attribute)
(mgplvm.models.svgplvm.SvgpLvm attribute)
(mgplvm.rdist.common.Rdist attribute)
(mgplvm.rdist.GP_circ.GP_circ attribute)
(mgplvm.rdist.GP_diag.GP_diag attribute)
(mgplvm.rdist.GPbase.GPbase attribute)
(mgplvm.rdist.relie.ReLie attribute)
(mgplvm.rdist.relie.ReLieBase attribute)
training_params() (in module mgplvm.crossval.train_model)
trK() (mgplvm.kernels.kernel.Kernel static method)
(mgplvm.kernels.linear.Linear method)
(mgplvm.kernels.stationary.Stationary method)
U
Uniform (class in mgplvm.lpriors.common)
update_params() (in module mgplvm.crossval.crossval)
V
variance (mgplvm.dists.NegativeBinomial property)
variational_expectation (mgplvm.likelihoods.Likelihood property)
variational_expectation() (mgplvm.likelihoods.Gaussian method)
(mgplvm.likelihoods.NegativeBinomial method)
(mgplvm.likelihoods.Poisson method)
(mgplvm.likelihoods.ZIPoisson method)
vFa (class in mgplvm.models.bfa)
VonMises (class in mgplvm.lpriors.torus)
Z
ZIPoisson (class in mgplvm.likelihoods)